Protein Data Bank
From Just Solve the File Format Problem
(Difference between revisions)
(initial version) |
|||
| (One intermediate revision by one user not shown) | |||
| Line 2: | Line 2: | ||
|formattype=electronic | |formattype=electronic | ||
|subcat=Scientific Data formats | |subcat=Scientific Data formats | ||
| − | |extensions={{ext|pdb}} | + | |extensions={{ext|pdb}}, {{ext|ent}}, {{ext|brk}} |
|mimetypes= | |mimetypes= | ||
}} | }} | ||
| − | + | [[Protein Data Bank]] ('''PDB''') is a database of proteins and other biological molecules. It is also the name of one of the file formats used in that database. The format stores the structure of a molecule, and related data. | |
| − | + | ||
| − | == | + | There is also an [[XML]]-based variant of PDB format, named [[PDBML]]. |
| + | |||
| + | == Specifications == | ||
* current official documentation [http://www.wwpdb.org/docs.html here] | * current official documentation [http://www.wwpdb.org/docs.html here] | ||
* Old format specifications from 1992: http://www.rcsb.org/pdb/file_formats/pdb/pdbguide2.2/PDB_format_1992.pdf | * Old format specifications from 1992: http://www.rcsb.org/pdb/file_formats/pdb/pdbguide2.2/PDB_format_1992.pdf | ||
* Version 2.2 specs from 1996: http://www.rcsb.org/pdb/file_formats/pdb/pdbguide2.2/pdb_contents_guide2.2.pdf | * Version 2.2 specs from 1996: http://www.rcsb.org/pdb/file_formats/pdb/pdbguide2.2/pdb_contents_guide2.2.pdf | ||
| + | |||
| + | == Sample files == | ||
| + | * ftp://ftp.wwpdb.org/pub/pdb/data/structures/divided/pdb/ | ||
| + | |||
| + | == Links == | ||
| + | * [[Wikipedia:Protein Data Bank (file format)|Wikipedia: Protein Data Bank (file format)]] | ||
| + | * [[Wikipedia:Protein Data Bank|Wikipedia: Protein Data Bank]] | ||
| + | * [http://www.wwpdb.org/ Worldwide Protein Data Bank website] | ||
| + | * [http://www.pdb.org/ RCSB PDB website] | ||
Latest revision as of 22:34, 16 July 2014
Protein Data Bank (PDB) is a database of proteins and other biological molecules. It is also the name of one of the file formats used in that database. The format stores the structure of a molecule, and related data.There is also an XML-based variant of PDB format, named PDBML.
[edit] Specifications
- current official documentation here
- Old format specifications from 1992: http://www.rcsb.org/pdb/file_formats/pdb/pdbguide2.2/PDB_format_1992.pdf
- Version 2.2 specs from 1996: http://www.rcsb.org/pdb/file_formats/pdb/pdbguide2.2/pdb_contents_guide2.2.pdf
