Health and Medicine
From Just Solve the File Format Problem
(Difference between revisions)
Dan Tobias (Talk | contribs) (→Medical Imaging) |
Dan Tobias (Talk | contribs) (→Biomedical signals (time series)) |
||
| Line 16: | Line 16: | ||
* [[EDF/EDF+]] (European Data Format) | * [[EDF/EDF+]] (European Data Format) | ||
* [[FEF]] (File Exchange Format for Vital signs, CEN TS 14271) | * [[FEF]] (File Exchange Format for Vital signs, CEN TS 14271) | ||
| − | * [[GDF v1.x]] (General Data Format for biomedical signals - Version 1.x) | + | * [[General Data Format for Biosignals]] |
| − | * [[GDF v2.x]] (The General Data Format for biomedical signals - Version 2.x) | + | ** [[GDF v1.x]] (General Data Format for biomedical signals - Version 1.x) |
| + | ** [[GDF v2.x]] (The General Data Format for biomedical signals - Version 2.x) | ||
* [[HL7aECG]] (Health Level 7 v3 annotated ECG) | * [[HL7aECG]] (Health Level 7 v3 annotated ECG) | ||
* [[MEF (Multiscale Electrophysiology File Format)]] | * [[MEF (Multiscale Electrophysiology File Format)]] | ||
Revision as of 22:59, 5 October 2015
Contents |
Biomedical signals (time series)
- ACQ (AcqKnowledge)
- BCI2000 (The BCI2000 project)
- BioSemi (BDF) data format
- BKR (EEG data format)
- CFWB (Chart Data File Format)
- DICOM-Waveform (An extension of Dicom for storing waveform data)
- ecgML (A markup language for electrocardiogram data acquisition and analysis)
- EDF/EDF+ (European Data Format)
- FEF (File Exchange Format for Vital signs, CEN TS 14271)
- General Data Format for Biosignals
- HL7aECG (Health Level 7 v3 annotated ECG)
- MEF (Multiscale Electrophysiology File Format)
- OpenXDF (Open Exchange Data Format)
- SCP-ECG (Standard Communication Protocol for Computer assisted electrocardiography)
- SIGIF (A digital SIGnal Interchange Format)
- WFDB (Format of Physiobank)
Genetic data
See Scientific Data formats#Biological for more formats
Medical Imaging
- Analyze AVW
- BioRad confocal image
- BRIK/HEAD (Voxel data from AFNI programs, dual-file (data and metadata, repectively))
- DeltaVision
- DICOM (Digital Imaging and Communications in Medicine (.dcm))
- gii (NIfTI offspring for brain surface data, single-file (combined data and meta-data) style)
- IMG/HDR (ANALYZE or NIfTI voxel data, dual-file (separate data and metadata, respectively))
- MGH (uncompressed)
- MGZ (zip-compressed)
- MINC (Medical Imaging NetCDF format; since version 2.0, based on HDF5 (.mnc))
- MRC (Medical Research Council)
- NII (Neuroimaging Informatics Technology Initiative (NIfTI) voxel data, single-file (combined data and metadata))
- OME-TIFF (Open Microscopy Imaging format)
- OME-XML (Open Microscopy Imaging format)
- OST (Open Spatio-Temporal) (extensible, open alternative for microscope images)
- SDM (Signed Differential Mapping- brain maps(.sdm))
- TRK (Vector data describing tracts of neurons, used by TrackVis)
Medical Record Keeping and Transaction Processing
Optical
- Eyeglass file format (Ross Spencer) - file format invented by digital preservation researcher to demonstrate how to create file formats
