Health and Medicine
From Just Solve the File Format Problem
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* [[EDF/EDF+]] (European Data Format) | * [[EDF/EDF+]] (European Data Format) | ||
* [[FEF]] (File Exchange Format for Vital signs, CEN TS 14271) | * [[FEF]] (File Exchange Format for Vital signs, CEN TS 14271) | ||
| − | * [[GDF v1.x]] (General Data Format for biomedical signals - Version 1.x) | + | * [[General Data Format for Biosignals]] |
| − | * [[GDF v2.x]] (The General Data Format for biomedical signals - Version 2.x) | + | ** [[GDF v1.x]] (General Data Format for biomedical signals - Version 1.x) |
| + | ** [[GDF v2.x]] (The General Data Format for biomedical signals - Version 2.x) | ||
* [[HL7aECG]] (Health Level 7 v3 annotated ECG) | * [[HL7aECG]] (Health Level 7 v3 annotated ECG) | ||
| + | * [[MEF (Multiscale Electrophysiology File Format)]] | ||
* [[OpenXDF]] (Open Exchange Data Format) | * [[OpenXDF]] (Open Exchange Data Format) | ||
* [[SCP-ECG]] (Standard Communication Protocol for Computer assisted electrocardiography) | * [[SCP-ECG]] (Standard Communication Protocol for Computer assisted electrocardiography) | ||
* [[SIGIF]] (A digital SIGnal Interchange Format) | * [[SIGIF]] (A digital SIGnal Interchange Format) | ||
* [[WFDB]] (Format of Physiobank) | * [[WFDB]] (Format of Physiobank) | ||
| + | |||
| + | == CPAP and oximeters (sleep apnea treatment) == | ||
| + | |||
| + | These devices generally use proprietary data formats. The [[SleepyHead]] open-source software can read some of them. | ||
| + | |||
| + | * [[ChoiceMMed MD300W1]] | ||
| + | * [[Contec CMS50D]] | ||
| + | * [[DeVilbiss Intellipap]] | ||
| + | * [[Fisher & Paykel Icon]] | ||
| + | * [[Philips Respironics System One]] | ||
| + | * [[ResMed S9]] | ||
| + | * [[Weinmann SOMNOsoft2]] | ||
== Genetic data == | == Genetic data == | ||
* [[23andMe]] | * [[23andMe]] | ||
| + | * [[Complete Genomics]] | ||
| + | |||
| + | See [[Scientific Data formats#Biological]] for more formats | ||
| + | |||
| + | == Health & Fitness Tracking (consumer) == | ||
| + | * [[Apple Health]] | ||
| + | ** [[Apple Health Export]] | ||
| + | * [[Fitbit]] | ||
| + | * [[Google Fit]] | ||
| + | * [[Microsoft Health and Fitness]] | ||
| + | |||
| + | See also [[Smartwatch]] | ||
== Medical Imaging == | == Medical Imaging == | ||
* [[Analyze AVW]] | * [[Analyze AVW]] | ||
| + | * [[Aperio SVS]] | ||
| + | * [[BioRad confocal image]] | ||
* [[BRIK/HEAD]] (Voxel data from AFNI programs, dual-file (data and metadata, repectively)) | * [[BRIK/HEAD]] (Voxel data from AFNI programs, dual-file (data and metadata, repectively)) | ||
| + | * [[DeltaVision]] | ||
* [[DICOM]] (Digital Imaging and Communications in Medicine (.dcm)) | * [[DICOM]] (Digital Imaging and Communications in Medicine (.dcm)) | ||
* [[gii]] (NIfTI offspring for brain surface data, single-file (combined data and meta-data) style) | * [[gii]] (NIfTI offspring for brain surface data, single-file (combined data and meta-data) style) | ||
* [[IMG/HDR]] (ANALYZE or NIfTI voxel data, dual-file (separate data and metadata, respectively)) | * [[IMG/HDR]] (ANALYZE or NIfTI voxel data, dual-file (separate data and metadata, respectively)) | ||
| − | * [[MGH]] (uncompressed) | + | * [[MGH]] (uncompressed)[https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/MghFormat mgh] |
* [[MGZ]] (zip-compressed) | * [[MGZ]] (zip-compressed) | ||
* [[MINC]] (Medical Imaging NetCDF format; since version 2.0, based on HDF5 (.mnc)) | * [[MINC]] (Medical Imaging NetCDF format; since version 2.0, based on HDF5 (.mnc)) | ||
| + | * [[MRC]] (Medical Research Council) | ||
* [[NII]] (Neuroimaging Informatics Technology Initiative (NIfTI) voxel data, single-file (combined data and metadata)) | * [[NII]] (Neuroimaging Informatics Technology Initiative (NIfTI) voxel data, single-file (combined data and metadata)) | ||
* [[OME-TIFF]] (Open Microscopy Imaging format) | * [[OME-TIFF]] (Open Microscopy Imaging format) | ||
| Line 42: | Line 72: | ||
* [[SDM]] (Signed Differential Mapping- brain maps(.sdm)) | * [[SDM]] (Signed Differential Mapping- brain maps(.sdm)) | ||
* [[TRK]] (Vector data describing tracts of neurons, used by TrackVis) | * [[TRK]] (Vector data describing tracts of neurons, used by TrackVis) | ||
| + | |||
| + | == Medical Record Keeping and Transaction Processing == | ||
| + | |||
| + | * [[Prescription Drug Event]] (PDE) | ||
| + | * [[TIBCO Foresight HIPAA Validator Validation Profile File]] (APF) | ||
| + | |||
| + | == Optical == | ||
| + | * [[Eyeglass file format (Ross Spencer)]] - file format invented by digital preservation researcher to demonstrate how to create file formats | ||
| + | |||
| + | == Links == | ||
| + | * [http://medconfidential.org/how-to-opt-out/ NHS England patients: how to opt-out from having your health data disclosed] | ||
| + | * [http://www.wired.co.uk/news/archive/2014-02/26/demand-transparency-from-nhs NHS data blunders mean you can't trust Care.data] | ||
Latest revision as of 06:05, 4 November 2022
Contents |
[edit] Biomedical signals (time series)
- ACQ (AcqKnowledge)
- BCI2000 (The BCI2000 project)
- BioSemi (BDF) data format
- BKR (EEG data format)
- CFWB (Chart Data File Format)
- DICOM-Waveform (An extension of Dicom for storing waveform data)
- ecgML (A markup language for electrocardiogram data acquisition and analysis)
- EDF/EDF+ (European Data Format)
- FEF (File Exchange Format for Vital signs, CEN TS 14271)
- General Data Format for Biosignals
- HL7aECG (Health Level 7 v3 annotated ECG)
- MEF (Multiscale Electrophysiology File Format)
- OpenXDF (Open Exchange Data Format)
- SCP-ECG (Standard Communication Protocol for Computer assisted electrocardiography)
- SIGIF (A digital SIGnal Interchange Format)
- WFDB (Format of Physiobank)
[edit] CPAP and oximeters (sleep apnea treatment)
These devices generally use proprietary data formats. The SleepyHead open-source software can read some of them.
- ChoiceMMed MD300W1
- Contec CMS50D
- DeVilbiss Intellipap
- Fisher & Paykel Icon
- Philips Respironics System One
- ResMed S9
- Weinmann SOMNOsoft2
[edit] Genetic data
See Scientific Data formats#Biological for more formats
[edit] Health & Fitness Tracking (consumer)
See also Smartwatch
[edit] Medical Imaging
- Analyze AVW
- Aperio SVS
- BioRad confocal image
- BRIK/HEAD (Voxel data from AFNI programs, dual-file (data and metadata, repectively))
- DeltaVision
- DICOM (Digital Imaging and Communications in Medicine (.dcm))
- gii (NIfTI offspring for brain surface data, single-file (combined data and meta-data) style)
- IMG/HDR (ANALYZE or NIfTI voxel data, dual-file (separate data and metadata, respectively))
- MGH (uncompressed)mgh
- MGZ (zip-compressed)
- MINC (Medical Imaging NetCDF format; since version 2.0, based on HDF5 (.mnc))
- MRC (Medical Research Council)
- NII (Neuroimaging Informatics Technology Initiative (NIfTI) voxel data, single-file (combined data and metadata))
- OME-TIFF (Open Microscopy Imaging format)
- OME-XML (Open Microscopy Imaging format)
- OST (Open Spatio-Temporal) (extensible, open alternative for microscope images)
- SDM (Signed Differential Mapping- brain maps(.sdm))
- TRK (Vector data describing tracts of neurons, used by TrackVis)
[edit] Medical Record Keeping and Transaction Processing
[edit] Optical
- Eyeglass file format (Ross Spencer) - file format invented by digital preservation researcher to demonstrate how to create file formats
