OME-XML

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{{FormatInfo
|[[File Formats]]
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|formattype=electronic
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|subcat=Health and Medicine
|[[Electronic File Formats]]
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|extensions={{ext|ome.xml}}
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}}
|[[Scientific Data formats]]
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|[[OME-XML]]
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== General description ==
 
== General description ==
This page describes the OME-XML file format for Open Microscopy, defined to make it simple to move microscopy data from one site and user to another. This format is related to [[OME-TIFF]], which was developed from it. The format is described on the [http://www.openmicroscopy.org/site/support/file-formats/the-ome-xml-file OME-XML page] at the Open Microscopy site.
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This page describes the OME-XML file format for Open Microscopy, defined to make it simple to move microscopy data from one site and user to another. This format is related to [[OME-TIFF]], which was developed from it. The format is described on the [http://www.openmicroscopy.org/site/support/ome-model/ome-xml/ OME-XML page] at the Open Microscopy site.
  
 
== Other information ==
 
== Other information ==
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== Software ==
 
== Software ==
The file format can be created, read and manipulated using the [http://loci.wisc.edu/software/bio-formats Bio-Formats Library] and the [http://www.openmicroscopy.org/site/support/omero4 OMERO Server]. There is an [http://validator.openmicroscopy.org.uk/ OME Validator] to check files, which can lso tell you the OME-XML version. However, almost any software can read the files; you don't need OME software to use OME-XML.
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The file format can be created, read and manipulated using the [http://www.openmicroscopy.org/site/products/bio-formats Bio-Formats Library] and the [http://www.openmicroscopy.org/site/support/omero OMERO Server]. However, almost any software can read the files; you don't need OME software to use OME-XML.
  
 
== Sample files ==
 
== Sample files ==
NA
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Some sample [http://downloads.openmicroscopy.org/images/OME-XML/ OME-XML files] are available.
  
 
== Identification ==
 
== Identification ==
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== References ==
 
== References ==
 
The original paper describing the concept is Goldberg, I. G., Allan, C., Burel, J.-M., Creager, D., Falconi, A., Hochheiser, H., Johnston, J., et al. (2005). The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging. Genome biology, 6(5), R47. doi:10.1186/gb-2005-6-5-r47 .
 
The original paper describing the concept is Goldberg, I. G., Allan, C., Burel, J.-M., Creager, D., Falconi, A., Hochheiser, H., Johnston, J., et al. (2005). The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging. Genome biology, 6(5), R47. doi:10.1186/gb-2005-6-5-r47 .
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[[Category:XML based file formats]]
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[[Category:Scientific Data formats]]

Latest revision as of 14:33, 15 July 2016

File Format
Name OME-XML
Ontology
Extension(s) .ome.xml

Contents

[edit] General description

This page describes the OME-XML file format for Open Microscopy, defined to make it simple to move microscopy data from one site and user to another. This format is related to OME-TIFF, which was developed from it. The format is described on the OME-XML page at the Open Microscopy site.

[edit] Other information

NA

[edit] Software

The file format can be created, read and manipulated using the Bio-Formats Library and the OMERO Server. However, almost any software can read the files; you don't need OME software to use OME-XML.

[edit] Sample files

Some sample OME-XML files are available.

[edit] Identification

The file extension is .ome.xml and the MIME Type is xxxxx.

[edit] References

The original paper describing the concept is Goldberg, I. G., Allan, C., Burel, J.-M., Creager, D., Falconi, A., Hochheiser, H., Johnston, J., et al. (2005). The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging. Genome biology, 6(5), R47. doi:10.1186/gb-2005-6-5-r47 .

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