Health and Medicine

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(Genetic data)
(CPAP and oximeters (sleep apnea treatment))
 
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* [[EDF/EDF+]] (European Data Format)
 
* [[EDF/EDF+]] (European Data Format)
 
* [[FEF]] (File Exchange Format for Vital signs, CEN TS 14271)
 
* [[FEF]] (File Exchange Format for Vital signs, CEN TS 14271)
* [[GDF v1.x]] (General Data Format for biomedical signals - Version 1.x)
+
* [[General Data Format for Biosignals]]
* [[GDF v2.x]] (The General Data Format for biomedical signals - Version 2.x)
+
** [[GDF v1.x]] (General Data Format for biomedical signals - Version 1.x)
 +
** [[GDF v2.x]] (The General Data Format for biomedical signals - Version 2.x)
 
* [[HL7aECG]] (Health Level 7 v3 annotated ECG)
 
* [[HL7aECG]] (Health Level 7 v3 annotated ECG)
 +
* [[MEF (Multiscale Electrophysiology File Format)]]
 
* [[OpenXDF]] (Open Exchange Data Format)
 
* [[OpenXDF]] (Open Exchange Data Format)
 
* [[SCP-ECG]] (Standard Communication Protocol for Computer assisted electrocardiography)
 
* [[SCP-ECG]] (Standard Communication Protocol for Computer assisted electrocardiography)
 
* [[SIGIF]] (A digital SIGnal Interchange Format)
 
* [[SIGIF]] (A digital SIGnal Interchange Format)
 
* [[WFDB]] (Format of Physiobank)
 
* [[WFDB]] (Format of Physiobank)
 +
 +
== CPAP and oximeters (sleep apnea treatment) ==
 +
 +
These devices generally use proprietary data formats. The [[SleepyHead]] open-source software can read some of them.
 +
 +
* [[ChoiceMMed MD300W1]]
 +
* [[Contec CMS50D]]
 +
* [[DeVilbiss Intellipap]]
 +
* [[Fisher & Paykel Icon]]
 +
* [[Philips Respironics System One]]
 +
* [[ResMed S9]]
 +
* [[Weinmann SOMNOsoft2]]
  
 
== Genetic data ==
 
== Genetic data ==
 
* [[23andMe]]
 
* [[23andMe]]
 
* [[Complete Genomics]]
 
* [[Complete Genomics]]
 +
 +
See [[Scientific Data formats#Biological]] for more formats
  
 
== Medical Imaging ==
 
== Medical Imaging ==
 
* [[Analyze AVW]]
 
* [[Analyze AVW]]
 +
* [[Aperio SVS]]
 
* [[BioRad confocal image]]
 
* [[BioRad confocal image]]
 
* [[BRIK/HEAD]] (Voxel data from AFNI programs, dual-file (data and metadata, repectively))
 
* [[BRIK/HEAD]] (Voxel data from AFNI programs, dual-file (data and metadata, repectively))
 +
* [[DeltaVision]]
 
* [[DICOM]] (Digital Imaging and Communications in Medicine (.dcm))
 
* [[DICOM]] (Digital Imaging and Communications in Medicine (.dcm))
 
* [[gii]] (NIfTI offspring for brain surface data, single-file (combined data and meta-data) style)
 
* [[gii]] (NIfTI offspring for brain surface data, single-file (combined data and meta-data) style)
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* [[MGZ]] (zip-compressed)
 
* [[MGZ]] (zip-compressed)
 
* [[MINC]] (Medical Imaging NetCDF format; since version 2.0, based on HDF5 (.mnc))
 
* [[MINC]] (Medical Imaging NetCDF format; since version 2.0, based on HDF5 (.mnc))
 +
* [[MRC]] (Medical Research Council)
 
* [[NII]] (Neuroimaging Informatics Technology Initiative (NIfTI) voxel data, single-file (combined data and metadata))
 
* [[NII]] (Neuroimaging Informatics Technology Initiative (NIfTI) voxel data, single-file (combined data and metadata))
 
* [[OME-TIFF]] (Open Microscopy Imaging format)
 
* [[OME-TIFF]] (Open Microscopy Imaging format)
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* [[SDM]] (Signed Differential Mapping- brain maps(.sdm))
 
* [[SDM]] (Signed Differential Mapping- brain maps(.sdm))
 
* [[TRK]] (Vector data describing tracts of neurons, used by TrackVis)
 
* [[TRK]] (Vector data describing tracts of neurons, used by TrackVis)
 +
 +
== Medical Record Keeping and Transaction Processing ==
 +
 +
* [[Prescription Drug Event]] (PDE)
 +
* [[TIBCO Foresight HIPAA Validator Validation Profile File]] (APF)
 +
 +
== Optical ==
 +
* [[Eyeglass file format (Ross Spencer)]] - file format invented by digital preservation researcher to demonstrate how to create file formats
  
 
== Links ==
 
== Links ==
 
* [http://medconfidential.org/how-to-opt-out/ NHS England patients: how to opt-out from having your health data disclosed]
 
* [http://medconfidential.org/how-to-opt-out/ NHS England patients: how to opt-out from having your health data disclosed]
 
* [http://www.wired.co.uk/news/archive/2014-02/26/demand-transparency-from-nhs NHS data blunders mean you can't trust Care.data]
 
* [http://www.wired.co.uk/news/archive/2014-02/26/demand-transparency-from-nhs NHS data blunders mean you can't trust Care.data]

Latest revision as of 01:43, 2 December 2018

File Format
Name Health and Medicine
Ontology

{{{caption}}}

Contents

[edit] Biomedical signals (time series)

[edit] CPAP and oximeters (sleep apnea treatment)

These devices generally use proprietary data formats. The SleepyHead open-source software can read some of them.

[edit] Genetic data

See Scientific Data formats#Biological for more formats

[edit] Medical Imaging

  • Analyze AVW
  • Aperio SVS
  • BioRad confocal image
  • BRIK/HEAD (Voxel data from AFNI programs, dual-file (data and metadata, repectively))
  • DeltaVision
  • DICOM (Digital Imaging and Communications in Medicine (.dcm))
  • gii (NIfTI offspring for brain surface data, single-file (combined data and meta-data) style)
  • IMG/HDR (ANALYZE or NIfTI voxel data, dual-file (separate data and metadata, respectively))
  • MGH (uncompressed)
  • MGZ (zip-compressed)
  • MINC (Medical Imaging NetCDF format; since version 2.0, based on HDF5 (.mnc))
  • MRC (Medical Research Council)
  • NII (Neuroimaging Informatics Technology Initiative (NIfTI) voxel data, single-file (combined data and metadata))
  • OME-TIFF (Open Microscopy Imaging format)
  • OME-XML (Open Microscopy Imaging format)
  • OST (Open Spatio-Temporal) (extensible, open alternative for microscope images)
  • SDM (Signed Differential Mapping- brain maps(.sdm))
  • TRK (Vector data describing tracts of neurons, used by TrackVis)

[edit] Medical Record Keeping and Transaction Processing

[edit] Optical

[edit] Links

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