http://fileformats.archiveteam.org/index.php?action=history&feed=atom&title=SAM 2026-04-08T07:49:05Z Revision history for this page on the wiki MediaWiki 1.19.2 http://fileformats.archiveteam.org/index.php?title=SAM&diff=36767&oldid=prev 2020-08-04T03:51:02Z

<p></p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 03:51, 4 August 2020</td> </tr><tr><td colspan="2" class="diff-lineno">Line 2:</td> <td colspan="2" class="diff-lineno">Line 2:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>|formattype=electronic</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>|formattype=electronic</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>|subcat=Scientific Data formats</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>|subcat=Scientific Data formats</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>|extensions={{ext|sam}}</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>|extensions={{ext|sam<ins class="diffchange diffchange-inline">}}, {{ext|sai</ins>}}</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>}}</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>}}</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>'''SAM''' (Sequence Alignment/Map) is a data format used for mapping sequences of DNA. It is in text (tab-separated) form, while A companion format [[BAM (Binary Alignment Map)|BAM]] is binary. It is classified as an alignment format, as is [[CRAM]]. This is as opposed to sequence-only, unaligned, formats such as [[FASTA and FASTQ]].</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>'''SAM''' (Sequence Alignment/Map) is a data format used for mapping sequences of DNA. It is in text (tab-separated) form, while A companion format [[BAM (Binary Alignment Map)|BAM]] is binary. It is classified as an alignment format, as is [[CRAM]]. This is as opposed to sequence-only, unaligned, formats such as [[FASTA and FASTQ]].</div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">Indexes associated with a SAM file are called SAI.</ins></div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>== Identification ==</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>== Identification ==</div></td></tr> </table>

Dan Tobias http://fileformats.archiveteam.org/index.php?title=SAM&diff=36766&oldid=prev 2020-08-04T03:50:02Z

<p></p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 03:50, 4 August 2020</td> </tr><tr><td colspan="2" class="diff-lineno">Line 2:</td> <td colspan="2" class="diff-lineno">Line 2:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>|formattype=electronic</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>|formattype=electronic</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>|subcat=Scientific Data formats</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>|subcat=Scientific Data formats</div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">|extensions={{ext|sam}}</ins></div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>}}</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>}}</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>'''SAM''' (Sequence Alignment/Map) is a data format used for mapping sequences of DNA. It is in text (tab-separated) form, while A companion format [[BAM (Binary Alignment Map)|BAM]] is binary. It is classified as an alignment format, as is [[CRAM]]. This is as opposed to sequence-only, unaligned, formats such as [[FASTA and FASTQ]].</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>'''SAM''' (Sequence Alignment/Map) is a data format used for mapping sequences of DNA. It is in text (tab-separated) form, while A companion format [[BAM (Binary Alignment Map)|BAM]] is binary. It is classified as an alignment format, as is [[CRAM]]. This is as opposed to sequence-only, unaligned, formats such as [[FASTA and FASTQ]].</div></td></tr> </table>

Dan Tobias http://fileformats.archiveteam.org/index.php?title=SAM&diff=36755&oldid=prev 2020-08-04T02:08:50Z

<p></p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 02:08, 4 August 2020</td> </tr><tr><td colspan="2" class="diff-lineno">Line 3:</td> <td colspan="2" class="diff-lineno">Line 3:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>|subcat=Scientific Data formats</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>|subcat=Scientific Data formats</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>}}</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>}}</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>'''SAM''' (Sequence Alignment/Map) is a data format used for mapping sequences of DNA. It is in text (tab-separated) form, while A companion format [[BAM]] is binary. It is classified as an alignment format, as is [[CRAM]]. This is as opposed to sequence-only, unaligned, formats such as [[FASTA and FASTQ]].</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>'''SAM''' (Sequence Alignment/Map) is a data format used for mapping sequences of DNA. It is in text (tab-separated) form, while A companion format [[<ins class="diffchange diffchange-inline">BAM (Binary Alignment Map)|</ins>BAM]] is binary. It is classified as an alignment format, as is [[CRAM]]. This is as opposed to sequence-only, unaligned, formats such as [[FASTA and FASTQ]].</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>== Identification ==</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>== Identification ==</div></td></tr> </table>

Dan Tobias http://fileformats.archiveteam.org/index.php?title=SAM&diff=36754&oldid=prev 2020-08-04T02:08:09Z

<p>Created page with &quot;{{FormatInfo |formattype=electronic |subcat=Scientific Data formats }} &#039;&#039;&#039;SAM&#039;&#039;&#039; (Sequence Alignment/Map) is a data format used for mapping sequences of DNA. It is in text (ta...&quot;</p> <p><b>New page</b></p><div>{{FormatInfo<br /> |formattype=electronic<br /> |subcat=Scientific Data formats<br /> }}<br /> '''SAM''' (Sequence Alignment/Map) is a data format used for mapping sequences of DNA. It is in text (tab-separated) form, while A companion format [[BAM]] is binary. It is classified as an alignment format, as is [[CRAM]]. This is as opposed to sequence-only, unaligned, formats such as [[FASTA and FASTQ]].<br /> <br /> == Identification ==<br /> Files will often start with a header line (though this is technically optional), such as &lt;code&gt;@HD VN:1.6 SO:coordinate&lt;/code&gt;, where the VN parameter gives the version number of the format and this may be followed with a SO or G0 parameter giving sorting order or grouping of alignments.<br /> <br /> == Specifications ==<br /> * [https://samtools.github.io/hts-specs/SAMv1.pdf SAM/BAM specification]<br /> * [https://samtools.github.io/hts-specs/SAMtags.pdf Optional fields (tags) specification]<br /> <br /> == Links ==<br /> * [[Wikipedia:SAM (file format)|Wikipedia article]]<br /> * [https://github.com/samtools/hts-specs HTS-Specs Github]<br /> * [https://sourceforge.net/projects/samtools/lists/samtools-devel samtools-devel mailing list]</div>

Dan Tobias