http://fileformats.archiveteam.org/index.php?action=history&feed=atom&title=BAM_%28Binary_Alignment_Map%29 2026-04-08T08:04:58Z Revision history for this page on the wiki MediaWiki 1.19.2 http://fileformats.archiveteam.org/index.php?title=BAM_(Binary_Alignment_Map)&diff=36769&oldid=prev 2020-08-04T03:51:42Z

<p></p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 03:51, 4 August 2020</td> </tr><tr><td colspan="2" class="diff-lineno">Line 2:</td> <td colspan="2" class="diff-lineno">Line 2:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>|formattype=electronic</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>|formattype=electronic</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>|subcat=Scientific Data formats</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>|subcat=Scientific Data formats</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>|extensions={{ext|bam}}, {<del class="diffchange diffchange-inline">[</del>ext|bai}}</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>|extensions={{ext|bam}}, {<ins class="diffchange diffchange-inline">{</ins>ext|bai}}</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>}}</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>}}</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>'''BAM''' (Binary Alignment Map) is a data format used for mapping sequences of DNA. It is a compressed binary version of the data in the [[SAM]] format. It is classified as an alignment format, as is [[CRAM]]. This is as opposed to sequence-only, unaligned, formats such as [[FASTA and FASTQ]].</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>'''BAM''' (Binary Alignment Map) is a data format used for mapping sequences of DNA. It is a compressed binary version of the data in the [[SAM]] format. It is classified as an alignment format, as is [[CRAM]]. This is as opposed to sequence-only, unaligned, formats such as [[FASTA and FASTQ]].</div></td></tr> </table>

Dan Tobias http://fileformats.archiveteam.org/index.php?title=BAM_(Binary_Alignment_Map)&diff=36768&oldid=prev 2020-08-04T03:51:30Z

<p></p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 03:51, 4 August 2020</td> </tr><tr><td colspan="2" class="diff-lineno">Line 2:</td> <td colspan="2" class="diff-lineno">Line 2:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>|formattype=electronic</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>|formattype=electronic</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>|subcat=Scientific Data formats</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>|subcat=Scientific Data formats</div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">|extensions={{ext|bam}}, {[ext|bai}}</ins></div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>}}</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>}}</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>'''BAM''' (Binary Alignment Map) is a data format used for mapping sequences of DNA. It is a compressed binary version of the data in the [[SAM]] format. It is classified as an alignment format, as is [[CRAM]]. This is as opposed to sequence-only, unaligned, formats such as [[FASTA and FASTQ]].</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>'''BAM''' (Binary Alignment Map) is a data format used for mapping sequences of DNA. It is a compressed binary version of the data in the [[SAM]] format. It is classified as an alignment format, as is [[CRAM]]. This is as opposed to sequence-only, unaligned, formats such as [[FASTA and FASTQ]].</div></td></tr> </table>

Dan Tobias http://fileformats.archiveteam.org/index.php?title=BAM_(Binary_Alignment_Map)&diff=36761&oldid=prev 2020-08-04T02:20:38Z

<p></p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 02:20, 4 August 2020</td> </tr><tr><td colspan="2" class="diff-lineno">Line 6:</td> <td colspan="2" class="diff-lineno">Line 6:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>BAM is compressed as a series of compressed blocks, each one a [[gzip]] archive. This is known as [[BGZF]] compression.</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>BAM is compressed as a series of compressed blocks, each one a [[gzip]] archive. This is known as [[BGZF]] compression.</div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">An index of a BAM is stored in a format called BAI, also described in the spec.</ins></div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>== Specifications ==</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>== Specifications ==</div></td></tr> </table>

Dan Tobias http://fileformats.archiveteam.org/index.php?title=BAM_(Binary_Alignment_Map)&diff=36759&oldid=prev 2020-08-04T02:17:49Z

<p>‎<span dir="auto"><span class="autocomment">Links</span></span></p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 02:17, 4 August 2020</td> </tr><tr><td colspan="2" class="diff-lineno">Line 12:</td> <td colspan="2" class="diff-lineno">Line 12:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>== Links ==</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>== Links ==</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>* [[Wikipedia:<del class="diffchange diffchange-inline">SAM (file format)</del>|Wikipedia article]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>* [[Wikipedia:<ins class="diffchange diffchange-inline">Binary Alignment Map</ins>|Wikipedia article]]</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* [https://github.com/samtools/hts-specs HTS-Specs Github]</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* [https://github.com/samtools/hts-specs HTS-Specs Github]</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* [https://sourceforge.net/projects/samtools/lists/samtools-devel samtools-devel mailing list]</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* [https://sourceforge.net/projects/samtools/lists/samtools-devel samtools-devel mailing list]</div></td></tr> </table>

Dan Tobias http://fileformats.archiveteam.org/index.php?title=BAM_(Binary_Alignment_Map)&diff=36756&oldid=prev 2020-08-04T02:13:44Z

<p>Created page with &quot;{{FormatInfo |formattype=electronic |subcat=Scientific Data formats }} &#039;&#039;&#039;BAM&#039;&#039;&#039; (Binary Alignment Map) is a data format used for mapping sequences of DNA. It is a compressed ...&quot;</p> <p><b>New page</b></p><div>{{FormatInfo<br /> |formattype=electronic<br /> |subcat=Scientific Data formats<br /> }}<br /> '''BAM''' (Binary Alignment Map) is a data format used for mapping sequences of DNA. It is a compressed binary version of the data in the [[SAM]] format. It is classified as an alignment format, as is [[CRAM]]. This is as opposed to sequence-only, unaligned, formats such as [[FASTA and FASTQ]].<br /> <br /> BAM is compressed as a series of compressed blocks, each one a [[gzip]] archive. This is known as [[BGZF]] compression.<br /> <br /> == Specifications ==<br /> * [https://samtools.github.io/hts-specs/SAMv1.pdf SAM/BAM specification]<br /> * [https://samtools.github.io/hts-specs/SAMtags.pdf Optional fields (tags) specification]<br /> <br /> == Links ==<br /> * [[Wikipedia:SAM (file format)|Wikipedia article]]<br /> * [https://github.com/samtools/hts-specs HTS-Specs Github]<br /> * [https://sourceforge.net/projects/samtools/lists/samtools-devel samtools-devel mailing list]</div>

Dan Tobias